Programme Manager
The Test Development Programme supported projects across a range of diseases and VLA science programmes in 2007/8 with the aim of strengthening VLA’s testing portfolio. Additionally, we have developed ‘proof of concept’ funding, which has allowed VLA scientists to undertake further work on tests with commercial potential.
AI has been high profile recently and VLA is the Community Reference Laboratory. Routine screening is now based on PCR detection. Various sampling protocols for the detection of AI were assessed and an optimal strategy has been defined and put into use. An internal control PCR has been validated to show whether avian material has been successfully transferred from a swab to the PCR reaction. If avian material is not detected in the internal control PCR reaction, the AI PCR cannot be interpreted as it is likely that the test sample was not appropriate. Projects have also been conducted to develop and validate immuno-histochemical (IHC) and lateral flow device (LFD) based methods for AI.
Luminex technology allows the detection of multiple analytes at the same time in the same tube. Targets can be antigens, antibodies or nucleic acids. We have assessed this approach to simplify the typing of Mycobacterium bovis (‘spoligotyping’) by using luminex as the detection method to replace the traditional reverse line blotting. Preliminary results are promising and the approach will be validated and transferred into routine use during the coming year. Applications for multiplex detection of serological targets for bovine respiratory diseases have also been assessed.
Immuno-blotting methods for the confirmation of two avian mycoplasma infections have been developed and validated. These will be introduced into routine testing and provide enhanced specificity compared to the rapid slide agglutination test (RSAT) which is the current screening test. Real time PCR diagnostics for Johne’s disease (Mycobacterium paratuberculosis) have been strengthened. Validation for the porcine reproductive and respiratory syndrome virus (PRRSV) PCR has been completed and the test introduced into routine use.
A micro-array based system has been validated for the detection of anti-microbial resistance genes in E.coli and Salmonella. This will be used as a routine testing method at VLA and is available to other laboratories via Identibac® (click here for further details).
Looking ahead, work for 2008/9 includes establishing several sequencing based technologies within the Central Sequencing Unit at VLA. These will support classical approaches for the identification and typing of organisms. For example, the identification of microbial contaminants up and down the food chain or the rapid and precise identification of strains involved in disease outbreaks. There will be continued assessment of multiplex approaches such as luminex and array based technologies for several applications and there will also be an enhancement of VLA’s real time PCR portfolio by the development and validation of new tests for a range of organisms.